PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000697.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 190aa    MW: 21206.4 Da    PI: 6.6307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000697.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000153860123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C++ F++   L  H++ H
  Itr_sc000697.1_g00006.1 38 YECTFCKRGFTNAQALGGHMNIH 60
                             99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.9E-53664IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.86E-73665No hitNo description
SMARTSM003550.00973860IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2193865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSIIAAATTD LNNNSDTSSD EADRRRGTEK PAAVGRSYEC TFCKRGFTNA QALGGHMNIH  60
RKDKLKAKQK SNNNNIPLQQ QGSSPSSYLV QIPTDQQRFY PSPRPQVQHV GYLFYPSYHQ  120
QVVGPNDGVL KAESLGLHGD LNLMGANLTL RIGPQREDDE DGGERLSKKE ELEENDEVDL  180
ELRLGHHKYS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-17C2H2 family protein